PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007886P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 169aa    MW: 18851.5 Da    PI: 7.0307
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007886P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.5e-08433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC+ C ++ H
  MELO3C007886P1  4 LCDSCESAAATLFCAADEAALCAVCDTKVH 33
                    6**************************998 PP

2zf-B_box27.46.9e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  MELO3C007886P1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGgkrmHK 92
                    789***************************99966666776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000216.88E-7345No hitNo description
SMARTSM003362.2E-7447IPR000315B-box-type zinc finger
PfamPF006431.7E-6442IPR000315B-box-type zinc finger
PROSITE profilePS501198.6745197IPR000315B-box-type zinc finger
SMARTSM003364.1E-95196IPR000315B-box-type zinc finger
PfamPF006431.2E-65285IPR000315B-box-type zinc finger
CDDcd000217.48E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRILCDSCES AAATLFCAAD EAALCAVCDT KVHMCNKLAS RHVRVGLANP SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD VIVHVGGKRM HKRYLRLRQR VEFPGDKRND GKDQNVKPME  120
QVEKVKGQNE ERGEIEKHEE LRVSGVEKDY SNGDGHSKRP NKVIDLNM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-109LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-109LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440795.11e-122PREDICTED: probable salt tolerance-like protein At1g78600 isoform X1
RefseqXP_008440793.11e-122PREDICTED: probable salt tolerance-like protein At1g78600 isoform X1
SwissprotC0SVM57e-65BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0A0KJB11e-115A0A0A0KJB1_CUCSA; Uncharacterized protein
STRINGVIT_04s0023g03030.t012e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2469833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-66DBB family protein